TargetFinder is a pipeline for identifying and characterizing the gene targets of distal enhancers. TargetFinder can be used to Quickly screen new functional genomics datasets for relevance to looping interactions. Identify under-studied proteins and epigenetic modifications that interact with known looping factors to greatly reduce false positive predictions.
Whalen, S., Truty, R. M., & Pollard, K. S. (2016). Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin. Nature genetics, 48(5), 488-496.